Upload BED (.bed) files (Duplicate inter-chromosome entries at the beginning of the file and description matching "chr1:1000..2000-chr2:1000..2000,2" where the last number is the PET count/score) or seven column tab delimited (.txt) files (chr start end chr start end, pet count/score).
New: Upload a two column tab delimited text file, where each row contains two gene symbols.
Import network file (.gml) previously exported using QuIN.
Upload Region Files
Upload a BED (.bed) or three column tab delimited text (.txt) files (chr start end) for annotating specific regions on the network.
Upload Gene List
Upload a list of genes or create a list below to use for annotating and querying the network.
Additionally, a gene list can be uploaded while adding any genes provided in the gene list form below. Genes should be separated by new lines.
Upload Disease/Trait List
Upload a list of traits/diseases or create a list below to use for annotating and querying the network.
Additionally, a list can be uploaded while adding any genes provided in the gene list form below. Traits/Diseases should be separated by new lines and based on the traits/diseases found in the
Upload SNP List
Upload a list of SNPs using their RefSNP id.
Choose a network to explore. Choosing a dataset to superimpose on the network will restrict the view to only components that
have an annotation from the lists of datasets selected. An example has been pre-selected (click view network to view).
If no data is shown please click the Reload Data button.
View components with paths from source annotations to target annotations or export all shortests paths from the source annotations to the target annotations.
Network measures over all components. Values are normalized with respect to their component.
Instead of assuming every node can be connected by an edge, the intrachromosome theoretical model computes the total number of possible edges
within the chromosome while also using a distance criteria for any hard limits put in place (i.e., 1MB) such that nodes with a distance larger
than this cut off will not contribute to adding an edge to the total possible edges.
Number of Permutations (1-100000):
Right click the image below and choose "Save Image As"
Cookies are used in this web application to store information for linking uploaded data to your browser.
If cookies are deleted for this site on your browser, access to the uploaded data is also unfortunately removed.
In the future we hope to provide alternatives such as links to the data for future use as well as sharing.